PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_21690_iso_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 236aa    MW: 26121.7 Da    PI: 4.9268
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_21690_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.5e-1950100256
                                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                           y+GVr +  +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g+
  cra_locus_21690_iso_2_len_877_ver_3  50 TYRGVRKRN-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALAIKGH 100
                                          69****887.**********843...6***********************99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.9E-1350100IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-3250108IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-2250108IPR016177DNA-binding domain
PROSITE profilePS5103223.70950107IPR001471AP2/ERF domain
SMARTSM003803.6E-3650113IPR001471AP2/ERF domain
PRINTSPR003671.1E-105162IPR001471AP2/ERF domain
CDDcd000187.69E-3251109No hitNo description
PRINTSPR003671.1E-107389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
XSSTTSSSSF STNSNSRKGQ NGEIDLKKKK KKSNNNINGG GGEDDEKHPT YRGVRKRNWG  60
KWVSEIREPR KKSRIWLGTY PTAEMAARAH DVAALAIKGH SAFLNFPHLA HELPRPASTL  120
PKDIQAAAAK AAASITFSAE SRDGDDDDQX REEEEDQPPI NRSELPNSHS SSDLSSENSQ  180
LESSTSNSNS NSPENDDDTF FNLPDLSIDV AGDHIDGYCF YDSGFRLEEP FLWDCY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-1651107360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089857.17e-74PREDICTED: ethylene-responsive transcription factor ERF034
SwissprotQ8LBQ72e-57ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A068UMC92e-70A0A068UMC9_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000669775e-63(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225